Basic Information
VIS ID
TVIS30007498
Fusion event
HIV-RINL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
39358849/38868209 (Hg38)
End
39358849/38868209 (Hg38)
Orient
+
Location type
UTR3
Fragile sites / regions
FRA19A
Target gene
RINL
Nearest miRNA
hsa-mir-10395/Upstream/3522582; hsa-let-7e/Downstream/541414;
Nearest TSS
ENST00000633603/Upstream/15862; ENST00000593830/Downstream/1712;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/15592, chr19-CpG: 85/Downstream/1067
Upstream sequence
ctaagtttgtatttttagtagagacgggtttctccatgtttgtcaggctggtcttgaactcccgacctcaggtgatctgcccaccttggcctcccaaagt
Downstream sequence
gctgggattacaggcatgagcaaccgcacccggcctcacttgtttctttttagttttttaaattgtagttactatgaacaatgaaatacataaatatatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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