Basic Information
VIS ID
TVIS30007501
Fusion event
HIV-FCGBP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
40417657/39911750 (Hg38)
End
40417657/39911750 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
FCGBP
Nearest miRNA
hsa-mir-10395/Upstream/81948; hsa-let-7e/Downstream/370793;
Nearest TSS
ENST00000633603/Upstream/5427; ENST00000596386/Downstream/22876;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5672, chr19-CpG: 74/Downstream/3402
Upstream sequence
ttcttattctctcccctattgtatccggagtgtttagaatagtgcctggaatacagaaggtatttttgaatgtttTGGATATTTgttgaatgaatgaatg
Downstream sequence
taagttgaaggagaaaaaggaatgatgtatttatcctgtatttttcagtggacaatgatgtgtaccactgtgtgctatgtatctgttgaatacatttaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate