Basic Information
VIS ID
TVIS30007502
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
40443408/39937501 (Hg38)
End
40443408/39937501 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/107699; hsa-let-7e/Downstream/345042;
Nearest TSS
ENST00000633603/Upstream/2875; ENST00000596386/Downstream/33504;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/12797, chr19-CpG: 39/Downstream/33103
Nearby gene
FCGBP(No orient, 2875)
Upstream sequence
tgtgtgtgtatgtgtgtgtgtACACCCCTGTGCTTTACCCTGTATTATATCAATTCTCAGGAAACCCTTTGGTGACCCGGGAAATAAACTCTGGGGACAC
Downstream sequence
TTCCTTATGGTCAGAGAAATCGCATCCATCCCTCCACTGGCAGCCTTGCTCTGAGCCCAAACAAGGGTATTTGTGTACCTGAGCCTTTCGGCCTCTTCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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