VISDB Viral Integration Site DataBase

VIS ID

TVIS30007510

Fusion event

HIV-TMEM91 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.2

Reference genome

Start

End

41876507/41370602 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-135b-3p ; hsa-mir-3620-5p ; hsa-mir-1587 ; hsa-mir-1226-5p ; hsa-mir-513a-5p ; hsa-mir-6789-5p ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-6829-5p ; hsa-mir-4656 ; hsa-mir-4721 ; hsa-mir-3616-3p ; hsa-mir-378g ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-6823-5p ; hsa-mir-6813-5p ; hsa-mir-6743-5p ; hsa-mir-6085 ; hsa-mir-4688 ; hsa-mir-4446-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-383-3p ; hsa-mir-6871-5p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4756-3p ; hsa-mir-508-3p ; hsa-mir-5186 ; hsa-mir-6499-3p ; hsa-mir-6511a-5p ; hsa-mir-6516-5p

Nearest miRNA

hsa-mir-10395/Upstream/1000695; hsa-let-7e/Downstream/499025;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/6374, chr19-CpG: 33/Downstream/6000

Upstream sequence

tttaaccgattctcctgcttcagcctcctgagcagctgggactacaggcgtgtgccaccttgtccagctaatttttgtatttttagtagagacggggttt

Downstream sequence

caccatattggccacgctggtctcgaactcctgaccttgtgatccacccgcctcggcctcccaaagtgctgggattacaagcgtgagccaccgtgcctgg