Basic Information
VIS ID
TVIS30007527
Fusion event
HIV-LIPE-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
43005048/42500896 (Hg38)
End
43005048/42500896 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA19A
Target gene
LIPE-AS1
Nearest miRNA
hsa-mir-10395/Upstream/149691; hsa-let-7e/Downstream/2152790;
Nearest TSS
ENST00000633603/Upstream/40048; ENST00000425668/Downstream/10188;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/76450, chr19-CpG: 20/Downstream/197051
Upstream sequence
agccactgcgcctggccTGGTCCTTGCTTTCTTGTTTCTGTTTTTTGTCCTTGGTCTCtgtcatgggctgaattgtgttcccttaaaattcttctgttga
Downstream sequence
aaccctaacccctggtgtctcagaatgtgactttatttggaaataggggctttaaaggtgattaagataatgcctgtagggtgggccctaattgattctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate