Basic Information
VIS ID
TVIS30007530
Fusion event
HIV-ZNF227 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
44719108/44214955 (Hg38)
End
44719108/44214955 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF227
miRNAs that regulate target gene
hsa-mir-500a-5p ; hsa-mir-30d-5p
Nearest miRNA
hsa-mir-10395/Upstream/1863750; hsa-let-7e/Downstream/438731;
Nearest TSS
ENST00000633603/Upstream/2332; ENST00000589237/Downstream/12170;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2393, chr19-CpG: 24/Downstream/44870
Upstream sequence
tactagtctgtggcctgttaggaacctgacagcacagaaggaggtgattggaggggtaccgcctgagctctgcctcctgccagatcagcaggggcattag
Downstream sequence
attctcataggagggactgcacatgtgaaggatctaggttgtgcgctccttatgagaatgtaactaatgcctcatgatttgaggtggaacctatcatccc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate