VISDB Viral Integration Site DataBase

VIS ID

TVIS30007531

Fusion event

HIV-OPA3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.32

Reference genome

Start

End

46077047/45573789 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1229-3p ; hsa-mir-484 ; hsa-mir-3615 ; hsa-mir-6516-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-500a-3p ; hsa-mir-6807-5p ; hsa-mir-4650-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-661 ; hsa-mir-6499-3p ; hsa-mir-767-5p ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6823-3p ; hsa-mir-4537 ; hsa-mir-2114-3p ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-495-5p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-4764-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4462 ; hsa-mir-1252-5p ; hsa-mir-4501 ; hsa-mir-1265 ; hsa-mir-7849-3p ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3922-3p ; hsa-mir-3653-5p ; hsa-mir-3176 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-3620-3p ; hsa-mir-125a-3p ; hsa-mir-504-5p ; hsa-mir-6878-3p ; hsa-mir-4757-5p ; hsa-mir-6744-3p ; hsa-mir-6778-3p ; hsa-mir-6836-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-136-5p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-6747-3p ; hsa-mir-6769b-3p ; hsa-mir-3183 ; hsa-mir-4723-3p ; hsa-mir-6752-3p ; hsa-mir-1910-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p

Nearest miRNA

hsa-mir-10395/Upstream/137085; hsa-let-7e/Downstream/65205;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/19898, chr19-CpG: 50/Downstream/10819

Upstream sequence

AACACTGTTTACTGAATGGTGCTGAGGGAACATCAGAACTATGAGGTTAAGTGCTATTCggtacagaaaggcagagggactcatgcaggacacacaccac

Downstream sequence

gtaaacagcagggcaaggatctgagtgcacgaagtctttatctagaAGCAGAGGTTTTGGCACTTGGGCAGTAATGACAAGAAGGGATTCCggctgggtg