Basic Information
VIS ID
TVIS30007534
Fusion event
HIV-DMWD integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
46292652/45789394 (Hg38)
End
46292652/45789394 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
DMWD
miRNAs that regulate target gene
hsa-mir-93-3p ; hsa-mir-222-3p ; hsa-mir-183-5p ; hsa-mir-10b-5p ; hsa-mir-4328 ; hsa-mir-4446-5p ; hsa-mir-7977 ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459
Nearest miRNA
hsa-mir-10395/Upstream/114370; hsa-let-7e/Downstream/229538;
Nearest TSS
ENST00000633603/Upstream/3421; ENST00000601618/Downstream/782;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2718, chr19-CpG: 97/Downstream/2904
Upstream sequence
TGTTCCGTTCACTCCCTTCAGCCattcactcattctgagaatatttatggaacacctcctctggaccagagagaatgagacagaagccaagagcagtccc
Downstream sequence
tgcccGCGGATAAGGTcgtttactggtatctcctcgtaggccaagttggcccaggactgagcaatctccatgtatgattctacaacagcggtcctgcaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate