VISDB Viral Integration Site DataBase

VIS ID

TVIS30007539

Fusion event

HIV-ARHGAP35 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.32

Reference genome

Start

End

47483453/46980196 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-296-3p ; hsa-mir-181b-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-574-5p ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-147a ; hsa-mir-3611 ; hsa-mir-6818-5p ; hsa-mir-6867-5p ; hsa-mir-4670-3p ; hsa-mir-6749-3p ; hsa-mir-6763-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-5587-3p ; hsa-mir-4707-5p ; hsa-mir-5196-3p ; hsa-mir-6501-3p ; hsa-mir-6768-3p ; hsa-mir-1827 ; hsa-mir-3612 ; hsa-mir-4443 ; hsa-mir-4524a-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-5091 ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-548t-3p ; hsa-mir-650 ; hsa-mir-6786-3p ; hsa-mir-6808-5p ; hsa-mir-6880-5p ; hsa-mir-6893-5p ; hsa-mir-7847-3p ; hsa-mir-940 ; hsa-mir-198 ; hsa-mir-210-3p ; hsa-mir-6774-3p ; hsa-mir-4330

Nearest miRNA

hsa-mir-10395/Upstream/270842; hsa-let-7e/Downstream/246746;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/118651, chr19-CpG: 40/Downstream/23853

Upstream sequence

ATTGAGggccgggcgcggtgtctcatgcctgtaatcccagcactttgggaggcaaaggtgggcggaccacctgaggtcaggagttcaagaccagcctggc

Downstream sequence

caacatggtgaaacctcgtctctactaaaaacacaaaaattagccaagcgtgatggtgggttcctataatcccagctactcgggaggctgaagcaggaga