Basic Information
VIS ID
TVIS30007544
Fusion event
HIV-DHX34 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
47866618/47363361 (Hg38)
End
47866618/47363361 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
DHX34
miRNAs that regulate target gene
hsa-mir-320b
Nearest miRNA
hsa-mir-10395/Upstream/136340; hsa-let-7e/Downstream/1646545;
Nearest TSS
ENST00000633603/Upstream/5347; ENST00000486327/Downstream/3752;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/13640, chr19-CpG: 43/Downstream/43489
Upstream sequence
tttatttttagtagagatcaggtcttgctatgttgcccaggctggtctcaaactcctgagctcaagtgatcttcccaccttggccttccaaagtactggg
Downstream sequence
attacagccatgagccattgtgcccagccAGCCAGGAAGCATTTACATAGGACCCAACCCCAGAGTGTCAGGGTCAGGAAGGATAGGGCTAGCCAAGCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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