Basic Information
VIS ID
TVIS30007566
Fusion event
HIV-LOC105372437 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50852349/50349092 (Hg38)
End
50852349/50349092 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
LOC105372437
Nearest miRNA
hsa-mir-10395/Upstream/415955; hsa-let-7e/Downstream/857837;
Nearest TSS
ENST00000633603/Upstream/15577; ENST00000595730/Downstream/10129;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/14902, chr19-CpG: 34/Downstream/8497
Nearby gene
NAPSB(No orient, 4344)
Upstream sequence
ggatctttttcattttttttttcccaagtagcctaaatgacacaagaccagtacccacattcttttccacacaatcctgattcatgacagatgtacttat
Downstream sequence
tttcggtcatgtagttttttcctaattaaaagagccacatcctgctcctaacttattgctattaatgacagcacagcgtcaaatcttaagattatgcatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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