Basic Information
VIS ID
TVIS30007570
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
51110327/50607070 (Hg38)
End
51110327/50607070 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/673933; hsa-let-7e/Downstream/599859;
Nearest TSS
ENST00000633603/Upstream/39025; ENST00000458538/Downstream/18220;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/690, chr19-CpG: 36/Downstream/857
Nearby gene
SNAR-F(No orient, 1985)
Upstream sequence
ACTTCAGAGGAAGAAATTGCGTCTTCCTAGCCGTTTTTAAATTACTTCAAAAAAAAAttttttttggacgaagtcttgctctgtcacccaggctggagtg
Downstream sequence
cagttgtttgatcttggctcactgcaatctccgcctcctgggttcaagcgggtctcctgtctcattctgccaggaggttgggattacaggcacacgccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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