Basic Information
VIS ID
TVIS30007571
Fusion event
HIV-ZNF615 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
52510558/52007305 (Hg38)
End
52510558/52007305 (Hg38)
Orient
+
Location type
UTR5
Fragile sites / regions
FRA19A
Target gene
ZNF615
Nearest miRNA
hsa-let-7e/Upstream/313966; hsa-mir-10394/Downstream/214715;
Nearest TSS
ENST00000633603/Upstream/3556; ENST00000614138/Downstream/776;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/58015, chr19-CpG: 30/Downstream/670
Upstream sequence
TATGAATATTAAGCACATAACATACACGTCTAAAATTGAAATATTCTGAAAATTTGACAAAGGTTATCTTTGAGTAACCGAGCTTACCATGGCAGAGATG
Downstream sequence
TTATCTTACTTGTGTCAGAAAGAACCTGAAAAGAAATATCCAAGAGGATACGCTGGAAACTTGCAGGACAAAGGGTAGAAGCCGCATCTTAAATATAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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