Basic Information
VIS ID
TVIS30007573
Fusion event
HIV-ZNF600 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
53273053/52769800 (Hg38)
End
53273053/52769800 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF600
miRNAs that regulate target gene
hsa-mir-320b ; hsa-mir-320a
Nearest miRNA
hsa-let-7e/Upstream/487907; hsa-mir-10394/Downstream/896879;
Nearest TSS
ENST00000633603/Upstream/34727; ENST00000594546/Downstream/16900;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/34554, chr19-CpG: 46/Downstream/16535
Upstream sequence
gagcaaaacccaccgaccctgtggggctggtccctacagagatggggtttcaccaggttgaccaggctggtctcaaactcctgacctcaagtaatcttcc
Downstream sequence
cgcctcagcctcccaaagttctgggattacaggtgtgagccactgtacctggTGGCACTTTGTGACATTAATGAGTGGAGTGTGGCAGTTATATTGCATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate