VISDB Viral Integration Site DataBase

VIS ID

TVIS30007575

Fusion event

HIV-ZNF347 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.42

Reference genome

Start

End

53648485/53145232 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6504-3p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-4799-5p ; hsa-mir-190a-3p ; hsa-mir-1250-3p ; hsa-mir-5011-5p ; hsa-mir-3976 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-1277-5p ; hsa-mir-6855-5p ; hsa-mir-5587-5p ; hsa-mir-3170 ; hsa-mir-6788-3p ; hsa-mir-6801-5p ; hsa-mir-411-5p ; hsa-mir-193b-5p ; hsa-mir-4716-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4781-3p ; hsa-mir-6890-5p ; hsa-mir-5680 ; hsa-mir-3658 ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-616-3p ; hsa-mir-153-5p ; hsa-mir-4317 ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-7113-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-8062 ; hsa-mir-7705 ; hsa-mir-337-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6513-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6742-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-1228-3p ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-4680-5p ; hsa-mir-3917 ; hsa-mir-150-5p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-122-5p ; hsa-mir-1273f ; hsa-mir-1289 ; hsa-mir-1304-3p ; hsa-mir-143-5p ; hsa-mir-3135b ; hsa-mir-3198 ; hsa-mir-3652 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4311 ; hsa-mir-4430 ; hsa-mir-4534 ; hsa-mir-4639-3p ; hsa-mir-4676-5p ; hsa-mir-4693-3p ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-5007-5p ; hsa-mir-504-3p ; hsa-mir-5698 ; hsa-mir-6499-3p ; hsa-mir-6514-5p ; hsa-mir-6794-3p ; hsa-mir-7855-5p ; hsa-mir-8082

Nearest miRNA

hsa-let-7e/Upstream/863339; hsa-mir-10394/Downstream/521447;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/12255, chr19-CpG: 37/Downstream/12945

Upstream sequence

acacaaaaattagccaggcgtggtggcacacgcctataatcctagctactcgggaggctgaggcaggagaattgcttgatcccaggaggtggaggatgca

Downstream sequence

gtgagccaagattgtgccatgcactccagcctgggtgacagagcaagagtctgtctagaaaaaaaaaaaaaaaagaagatacaaaaacacatggaaatta