Basic Information
VIS ID
TVIS30007578
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37/hg19
Start
55860701/55349333 (Hg38)
End
55860701/55349333 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/104083; hsa-mir-10394/Downstream/38848;
Nearest TSS
ENST00000633603/Upstream/3260; ENST00000291934/Downstream/2835;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1873, chr19-CpG: 18/Downstream/3429
Nearby gene
COX6B2(No orient, 369)
Upstream sequence
CCAAGGATTTGTCTCTGAGTGAACTGAAGCCATGCTGTTCGTttctttccttttttttttttttttttttttgagacagggtctgtggcccaggctggag
Downstream sequence
tgcagtggcgccatctcggctcactgcaacctccacctcctggattgaagcaattctcctgcctcagcctcctgagtagctgggaccataggcacacgcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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