Basic Information
VIS ID
TVIS30007581
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37/hg19
Start
56131758/55620392 (Hg38)
End
56131758/55620392 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/232150; hsa-mir-10394/Downstream/2714296;
Nearest TSS
ENST00000633603/Upstream/4420; ENST00000590190/Downstream/4174;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3591, chr19-CpG: 69/Downstream/1281
Nearby gene
ZNF784(No orient, 349)
Upstream sequence
TAAGGGACTGGACATAAGAATGAGGATGAAGAAGGTTTAAACCTGCCCAGGTATCCAGCTTGGGTGGTGGTGCCAATGACATCAGAAGCATGGAGGTTTC
Downstream sequence
TTTGAGGAAAATGGAATGAGTTCTGTTCACATTGTGAGTTGCCTGTGAGTTATCTCATGGGGCCCACTGGGTGAACAGAAAGGTGTGCAAATCAGAGGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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