Basic Information
VIS ID
TVIS30007582
Fusion event
HIV-LOC105372472 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
57234262/56722894 (Hg38)
End
57234262/56722894 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
LOC105372472
Nearest miRNA
hsa-let-7e/Upstream/1334652; hsa-mir-10394/Downstream/1611794;
Nearest TSS
ENST00000633603/Upstream/15601; ENST00000597946/Downstream/42450;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/50887, chr19-CpG: 31/Downstream/42352
Nearby gene
ZIM2-AS1(No orient, 42428)
Upstream sequence
gattctcttgcttcagcctcccaagtagctgggattagaggcatgtgccatgaggcttggctaatttttgtattcttagtagagatggggttttgatata
Downstream sequence
ttgatcaaactgctctcgaactcctggccccaaatgatctgccttcctcggcctcccaaagtgctgggaattacaggcatgagccattgcactaagcccc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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