VISDB Viral Integration Site DataBase

VIS ID

TVIS30007583

Fusion event

HIV-ZNF264 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.43

Reference genome

Start

End

57725320/57213952 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-130b-3p ; hsa-mir-122-5p ; hsa-mir-7-5p ; hsa-mir-93-5p ; hsa-mir-24-3p ; hsa-mir-1303 ; hsa-mir-1229-3p ; hsa-mir-27b-5p ; hsa-mir-484 ; hsa-let-7a-5p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-1200 ; hsa-mir-3163 ; hsa-mir-4324 ; hsa-mir-3607-3p ; hsa-mir-5692a ; hsa-mir-142-5p ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-4313 ; hsa-mir-3943 ; hsa-mir-5590-3p ; hsa-mir-6755-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-3689a-5p ; hsa-mir-3689b-5p ; hsa-mir-3689e ; hsa-mir-3689f ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-628-5p ; hsa-mir-302e ; hsa-mir-302f ; hsa-mir-548ao-5p ; hsa-mir-548ax ; hsa-mir-146a-3p ; hsa-mir-340-5p ; hsa-mir-573 ; hsa-mir-449c-3p ; hsa-mir-2117 ; hsa-mir-3616-5p ; hsa-mir-8086 ; hsa-mir-889-3p ; hsa-mir-3154 ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-513a-3p ; hsa-mir-590-3p ; hsa-mir-513c-3p ; hsa-mir-4282 ; hsa-mir-3606-3p ; hsa-mir-4453 ; hsa-mir-4538 ; hsa-mir-7977 ; hsa-mir-5011-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-143-3p ; hsa-mir-548p ; hsa-mir-3976 ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-190a-3p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-4458 ; hsa-mir-4459 ; hsa-mir-4500 ; hsa-mir-205-3p ; hsa-mir-650 ; hsa-mir-1247-3p ; hsa-mir-1827 ; hsa-mir-3612 ; hsa-mir-1273e ; hsa-mir-100-3p ; hsa-mir-127-5p ; hsa-mir-3928-5p ; hsa-mir-6806-3p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-4795-5p ; hsa-mir-4635 ; hsa-mir-511-3p ; hsa-mir-548au-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-4649-3p ; hsa-mir-4257 ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-378a-5p ; hsa-mir-544b ; hsa-mir-4284 ; hsa-mir-7844-5p ; hsa-mir-8075 ; hsa-mir-3914 ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6715b-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-202-3p ; hsa-mir-6715a-3p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-8062 ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-3191-5p ; hsa-mir-5584-3p ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-3168 ; hsa-mir-1277-5p ; hsa-mir-3921 ; hsa-mir-4653-5p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-142-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-3179 ; hsa-mir-611 ; hsa-mir-3131 ; hsa-mir-648 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4742-5p ; hsa-mir-383-3p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-7162-3p ; hsa-mir-6765-3p ; hsa-mir-4433b-3p ; hsa-mir-6771-3p ; hsa-mir-6770-3p ; hsa-mir-4730 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-513b-5p ; hsa-mir-25-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6849-3p ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-4293 ; hsa-mir-624-3p ; hsa-mir-3974 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-335-3p ; hsa-mir-3674 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-4775 ; hsa-mir-4735-5p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-1255b-2-3p ; hsa-mir-3925-5p ; hsa-mir-4468 ; hsa-mir-4771

Nearest miRNA

hsa-let-7e/Upstream/1825710; hsa-mir-10394/Downstream/1120736;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/21895, chr19-CpG: 40/Downstream/16635

Upstream sequence

ttaatttataatagttaagcattccttaaagtatttcattaatgttaaaaattttcagcgtatagatccctatgcatttttgttagaatttgcatcctag

Downstream sequence

ggtgcttttttgtttgtgtgtgtgtgtaatttgagtgattgtaaatggcattgatgtttgaactttgaattgcacacaatttttggtagtatacagaaat