VISDB Viral Integration Site DataBase

VIS ID

TVIS30007585

Fusion event

HIV-ZNF584 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.43

Reference genome

Start

End

58924667/58413300 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6134 ; hsa-mir-6089 ; hsa-mir-383-3p ; hsa-mir-34b-3p ; hsa-mir-3187-3p ; hsa-mir-5096 ; hsa-mir-4435 ; hsa-mir-4701-5p ; hsa-mir-588 ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6880-5p ; hsa-mir-4755-3p ; hsa-mir-4653-3p ; hsa-mir-4781-3p ; hsa-mir-4716-5p ; hsa-mir-629-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6727-5p ; hsa-mir-1257 ; hsa-mir-3925-3p ; hsa-mir-4687-3p ; hsa-mir-766-3p ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-1825 ; hsa-mir-4302 ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-433-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-1228-3p ; hsa-mir-665 ; hsa-mir-4650-3p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-7162-3p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4695-5p ; hsa-mir-3154 ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-25-5p ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4663 ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-648 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-7160-5p ; hsa-mir-8077 ; hsa-mir-1234-3p ; hsa-mir-4676-5p ; hsa-mir-4790-3p ; hsa-mir-575 ; hsa-mir-6843-3p ; hsa-mir-6848-3p ; hsa-mir-6858-3p ; hsa-mir-7107-5p

Nearest miRNA

hsa-let-7e/Upstream/19854; hsa-mir-6807/Downstream/136985;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/4138, chr19-CpG: 81/Downstream/26547

Upstream sequence

ttgttccttgaggtataaagttaggttattggtttgagatcttttaaaatatgggtatttatagccataatgttcctgctaagctctgcattttctgcat

Downstream sequence

cccataattttttgtttgttgtggtatttttttctttttctttttctttttttttaatttttctttttgagatggagtcctgttgcccacgctggaatgc