Basic Information
VIS ID
TVIS30007586
Fusion event
HIV-ACP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
273002/273002 (Hg38)
End
273002/273002 (Hg38)
Orient
-
Location type
Intronic
Target gene
ACP1
miRNAs that regulate target gene
hsa-mir-151a-3p ; hsa-mir-25-3p ; hsa-mir-595 ; hsa-mir-648 ; hsa-mir-3115 ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-5680 ; hsa-mir-6513-3p ; hsa-mir-6868-3p ; hsa-mir-371a-5p ; hsa-mir-205-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-609 ; hsa-mir-6772-5p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6882-5p
Nearest miRNA
hsa-mir-10b/Downstream/5701660;
Nearest TSS
ENST00000437798/Upstream/6604; ENST00000463831/Downstream/1571;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/7764, chr2-CpG: 263/Downstream/14351
Upstream sequence
ACCTTTTCGGAAATGGAATCTTCATTGGTCAGGTGATTCAACATTTTTATACAATTTATCCATCCTCATCTCTTCAGGATTTGCATACCTTGCCAGTTTC
Downstream sequence
TACTGGCCATTGTTGAAAATACATTTATTTGgagaagtccaaagccaaggggctcatggggctgtgaagtccttcttgctgcatcgtcctgtggtagaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate