Basic Information
VIS ID
TVIS30007589
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
7643764/7503633 (Hg38)
End
7643764/7503633 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-7158/Upstream/853194; hsa-mir-10b/Downstream/2688981;
Nearest TSS
ENST00000437798/Upstream/242762; ENST00000417930/Downstream/168613;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/72122, chr2-CpG: 29/Downstream/263566
Nearby gene
LOC100506274(No orient, 53383)
Upstream sequence
ttcctatgctctgatgaccccagacatttttgtctttgtaaataataatagctgaattttttttatgtttcatagagtcagctaaactgtctctatgtta
Downstream sequence
gaatgttcagtccctttatatgggttgtaatttactgacgtatttgtgtttatttctaccatttttttttttgcttttacttttcaattttttgtatttc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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