Basic Information
VIS ID
TVIS30007590
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
7710975/7570844 (Hg38)
End
7710975/7570844 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-7158/Upstream/920405; hsa-mir-10b/Downstream/2621770;
Nearest TSS
ENST00000437798/Upstream/309973; ENST00000417930/Downstream/101402;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/139333, chr2-CpG: 29/Downstream/196355
Nearby gene
LOC100506274(No orient, 120594)
Upstream sequence
ggagttcgagaccagcctgactaacatggtgaaacaccgtctctactaaaaatacaaaaattagccagctgtggtggcacgtgcctatagtctcagctac
Downstream sequence
ttaggaggctgaggcagaagaattacttgaacctgggaggcggaggttgcagtgagcccagatcacaccattgcactccagcctgggtgacagagtaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate