VISDB Viral Integration Site DataBase

VIS ID

TVIS30007591

Fusion event

HIV-YWHAQ integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p25.1

Reference genome

Start

End

9756663/9616534 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-214-3p ; hsa-mir-1910-5p ; hsa-mir-193b-3p ; hsa-mir-424-5p ; hsa-mir-423-3p ; hsa-mir-328-3p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-mir-620 ; hsa-mir-578 ; hsa-mir-1270 ; hsa-mir-6505-5p ; hsa-mir-526b-5p ; hsa-mir-4683 ; hsa-mir-4635 ; hsa-mir-3691-3p ; hsa-mir-511-3p ; hsa-mir-576-3p ; hsa-mir-302a-5p ; hsa-mir-545-3p ; hsa-mir-4496 ; hsa-mir-5586-3p ; hsa-mir-651-3p ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-6838-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-497-5p ; hsa-mir-195-5p ; hsa-mir-7702 ; hsa-mir-5011-3p ; hsa-mir-151a-3p ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-20a-3p ; hsa-mir-342-3p ; hsa-mir-4717-3p ; hsa-mir-4719 ; hsa-mir-4762-5p ; hsa-mir-3688-3p ; hsa-mir-890 ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-548n

Nearest miRNA

hsa-mir-7158/Upstream/2966095; hsa-mir-10b/Downstream/576080;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/60057, chr2-CpG: 145/Downstream/13526

Nearest cancer related gene

YWHAQ(OG, No orient, 0)

Upstream sequence

taagcaaccaaaaaaaaaaaaaaaggacttcaaaattaacaatgtttctgcttcaaaggacactaacaagacaatccacagaacgggagaaaaacatttg

Downstream sequence

caaatcatctatctgataaaggtctagtatccataatatatttaaaaaaaaaaaagattacaacccaatgataaaaacacaaataacccaattttaaaac