Basic Information
VIS ID
TVIS30007594
Fusion event
HIV-LOC101929691 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
10440447/10300321 (Hg38)
End
10440447/10300321 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101929691
Nearest miRNA
hsa-mir-4261/Upstream/107650; hsa-mir-10b/Downstream/1240284;
Nearest TSS
ENST00000437798/Upstream/157996; ENST00000423674/Downstream/2568;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/176967, chr2-CpG: 175/Downstream/1861
Nearby gene
HPCAL1(No orient, 2583)
Upstream sequence
atttaataccactgagctgttcactttaaaaggattaagatgataaattttatgttatgtgtatattataataaaagttagaaaaaAATTGTCATAAAAC
Downstream sequence
TAAGTCAGATATTAAGAACAATCAGAATTACTTCTGTCTTGTTTACAGTCATCATATGAAAAACAAATTGTTTATCTAGCATGACACCtgttatgggttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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