Basic Information
VIS ID
TVIS30007595
Fusion event
HIV-LPIN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
11911370/11771244 (Hg38)
End
11911370/11771244 (Hg38)
Orient
+
Location type
Intronic
Target gene
LPIN1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-485-5p ; hsa-mir-432-3p ; hsa-mir-122-5p ; hsa-mir-1289 ; hsa-mir-129-5p ; hsa-mir-3198 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4802-3p ; hsa-mir-489-3p ; hsa-mir-514a-3p ; hsa-mir-514b-3p ; hsa-mir-6514-5p
Nearest miRNA
hsa-mir-4261/Upstream/3719; hsa-mir-10b/Downstream/65689;
Nearest TSS
ENST00000437798/Upstream/24606; ENST00000460096/Downstream/5963;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/24163, chr2-CpG: 29/Downstream/13613
Upstream sequence
TGAGTACAAAGTGGCATTCAATACATTGTTGGCTTTCTGATCTTCTACCAGATTGGGCAGCCACATCTCCAGGTCACCATGGCTGTGGCCTCTAGCTGGG
Downstream sequence
CCATCTGCTGTGGCCCTCCCCAGGAGGTGCTTGGCCTCTGAAGTGAATCCTGGAGGCCTCTGGCAAGGCCCTGCTTCTTATACCTGAATTAACGAGGCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate