Basic Information
VIS ID
TVIS30007597
Fusion event
HIV-NBAS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
15698604/15558480 (Hg38)
End
15698604/15558480 (Hg38)
Orient
+
Location type
Intronic
Target gene
NBAS
miRNAs that regulate target gene
hsa-mir-432-5p
Nearest miRNA
hsa-mir-3125/Upstream/2821036; hsa-mir-10b/Downstream/3789949;
Nearest TSS
ENST00000437798/Upstream/47177; ENST00000438178/Downstream/2850;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/922795, chr2-CpG: 27/Downstream/2535
Upstream sequence
AGCTGCATTAGAGCTAAAAACGTGCATGCGTAAatatacaaatgtatacatatacatacatatgtgtgtatatataaatatatatataATTAAACTCAGA
Downstream sequence
TAACACACATTACTTTTATTAGGCTCCACATCAGAAGTCTAAAGAACACATTTTAACTGTTAACCATATCATTACTGTAGAGAAATAAGCTATATTTACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate