Basic Information
VIS ID
TVIS30007598
Fusion event
HIV-DDX1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
15749388/15609264 (Hg38)
End
15749388/15609264 (Hg38)
Orient
-
Location type
Intronic
Target gene
DDX1
miRNAs that regulate target gene
hsa-mir-1260a ; hsa-mir-342-5p
Nearest miRNA
hsa-mir-3125/Upstream/2871820; hsa-mir-10b/Downstream/3739165;
Nearest TSS
ENST00000437798/Upstream/10111; ENST00000459706/Downstream/8041;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/16894, chr2-CpG: 220/Downstream/330415
Upstream sequence
ATAAAAGGATTTGGGAAGAATGTAAAATGCTAGTGTGAATTGATTTTTGTGCTGTGATTATGTATAAAAATGAACATGATTATAGACAAAAGTTAGAGGG
Downstream sequence
GAAGATGAATAATAAAATCAATTTATTGGTTAAGATGGTAAAGTCATGGGCCACTTGTTTGGTATTCGGTACAAATGGACATTTTCTTTCTTAAAACCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate