VISDB Viral Integration Site DataBase

VIS ID

TVIS30007600

Fusion event

HIV-GEN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p24.2

Reference genome

Start

End

17956162/17774895 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-3692-3p ; hsa-mir-4762-5p ; hsa-mir-3144-3p ; hsa-mir-875-5p ; hsa-mir-4684-5p ; hsa-mir-4668-5p ; hsa-mir-3675-3p ; hsa-mir-5584-5p ; hsa-mir-605-5p ; hsa-mir-4668-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3612 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4426 ; hsa-mir-455-3p ; hsa-mir-4647 ; hsa-mir-4662b ; hsa-mir-4728-5p ; hsa-mir-490-3p ; hsa-mir-566 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-652-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6789-3p ; hsa-mir-6799-5p ; hsa-mir-6807-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7851-3p ; hsa-mir-155-5p ; hsa-mir-323a-5p ; hsa-mir-5002-5p ; hsa-mir-5700 ; hsa-mir-6076 ; hsa-mir-6797-3p ; hsa-mir-876-3p ; hsa-mir-889-3p

Nearest miRNA

hsa-mir-3125/Upstream/5037451; hsa-mir-10b/Downstream/1573534;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/20222, chr2-CpG: 18/Downstream/102876

Upstream sequence

GGACCAAAAGTGCAAGATGTTGATGGAGTCAGGCTTATTTCTTGAAACCCAGTAGCTAGGGTGGAATTTCTCTGTTCCTATCAGGAGATTAGAGGCTGGG

Downstream sequence

GTAGATAATAAAAAACTAACCAAATGCTGCCTGAAGCCCAGAAAGCCCACTGGAAATTACTCAAAGAGACTAGAGAGATAGAAGTGAAGACAGATAAAAT