Basic Information
VIS ID
TVIS30007601
Fusion event
HIV-LOC105373454 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
18681434/18500168 (Hg38)
End
18681434/18500168 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2C
Target gene
LOC105373454
Nearest miRNA
hsa-mir-3125/Upstream/5762724; hsa-mir-10b/Downstream/848261;
Nearest TSS
ENST00000437798/Upstream/620785; ENST00000431697/Downstream/48036;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/620515, chr2-CpG: 69/Downstream/60034
Nearby gene
RDH14(No orient, 54555)
Upstream sequence
gaaagaagtagaaaatttaaacagagttaggctaaatttctgataacctcggagctatcatactgaccccaaactaattacttTTTCTGTGTAATAGATA
Downstream sequence
AACAAAATATGTATATCCTTAGAGCTTCTGAAACTTTGTTGTTAAGTGCGGCCAAACATATTTTTAAACAATCCACTAAGAAAAGTATTGTTATATGCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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