Basic Information
VIS ID
TVIS30007602
Fusion event
HIV-LINC01808 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
19681403/19481642 (Hg38)
End
19681403/19481642 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01808
Nearest miRNA
hsa-mir-3125/Upstream/133137; hsa-mir-10b/Downstream/5846998;
Nearest TSS
ENST00000437798/Upstream/12621; ENST00000432822/Downstream/230073;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/118438, chr2-CpG: 39/Downstream/387025
Nearby gene
OSR1(No orient, 123031)
Upstream sequence
TTCCAAGTTGGTTAAATTACACATCCATTGTTTTAGATAGTAGTTCAGAGATCTCCTTCTTAACAGTAAGTAtttttttaaaatgctttattaaggtatt
Downstream sequence
attgacctatactgtacatatttaatatatatattttgatgagtttgtggatatgtatacatccatgaatctattaccactgtcaaggccatcaacatat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate