Fusion event
HIV-NCOA1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
24853894/24631025 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-3125/Upstream/5282520; hsa-mir-10b/Downstream/697615;
Upstream sequence
TCAGTGTTTACAATGTTTTTAACATTAATATGGATGGTTTGATTTCAAATTTTTTAAAAATCTTTTTCATCTTCAGTTTGGAAAGCATGACTTGTGTCAT
Downstream sequence
CATTGATAAGAAAGTTGGTAATATTCTTTCTTCATTCTTTTATTAAAATCTTGCATTTTTTCACCCAAAATTTGATCTCTTAAAACCACCTTTTTCAGGC
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.