Basic Information
VIS ID
TVIS30007607
Fusion event
HIV-CENPO integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
25030167/24807298 (Hg38)
End
25030167/24807298 (Hg38)
Orient
+
Location type
Intronic
Target gene
CENPO
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-1825 ; hsa-mir-3621 ; hsa-mir-3925-3p ; hsa-mir-6887-3p ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-6729-3p ; hsa-mir-196a-3p ; hsa-mir-4787-5p ; hsa-mir-506-5p ; hsa-mir-543 ; hsa-mir-181a-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-149-5p ; hsa-mir-152-5p ; hsa-mir-1908-5p ; hsa-mir-2682-3p ; hsa-mir-3064-5p ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4484 ; hsa-mir-4505 ; hsa-mir-4731-5p ; hsa-mir-4794 ; hsa-mir-5787 ; hsa-mir-615-5p ; hsa-mir-6504-5p ; hsa-mir-663a ; hsa-mir-664a-5p ; hsa-mir-6781-3p ; hsa-mir-6787-5p ; hsa-mir-6842-3p ; hsa-mir-7155-5p ; hsa-mir-7704
Nearest miRNA
hsa-mir-3125/Upstream/5458793; hsa-mir-10b/Downstream/521342;
Nearest TSS
ENST00000437798/Upstream/13820; ENST00000464156/Downstream/8327;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/13540, chr2-CpG: 129/Downstream/112305
Upstream sequence
ATGAAGTGCACTATGACAGagattaaagtatagagcattaccaacacccagaagcctccagtttgcctcttcctagtcttctcttaagtcttctcttaag
Downstream sequence
gtacccactattctgatttctgtcaccatacataggttttacctgattttgaactttatataaatgttaaaaagctaatttatagcttaaaaagtacaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate