VISDB Viral Integration Site DataBase

VIS ID

TVIS30007616

Fusion event

HIV-SELENOI integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.3

Reference genome

Start

End

26610765/26387897 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-30a-5p ; hsa-mir-5582-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-374a-5p ; hsa-mir-3646 ; hsa-mir-6504-3p ; hsa-mir-579-3p ; hsa-mir-664b-3p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-3117-5p ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-4267 ; hsa-mir-6730-3p ; hsa-mir-3200-5p ; hsa-mir-129-5p ; hsa-mir-5089-5p ; hsa-mir-4715-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4775 ; hsa-mir-5589-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4735-5p ; hsa-mir-6872-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4438 ; hsa-mir-590-3p ; hsa-mir-582-3p ; hsa-mir-4709-3p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-5581-3p ; hsa-mir-5093 ; hsa-mir-875-3p ; hsa-mir-6736-3p ; hsa-mir-3065-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4533 ; hsa-mir-5187-3p ; hsa-mir-1324 ; hsa-mir-6783-5p ; hsa-mir-6856-5p ; hsa-mir-8080 ; hsa-mir-6758-5p ; hsa-mir-496 ; hsa-mir-382-3p

Nearest miRNA

hsa-mir-1301/Upstream/1059176; hsa-mir-10b/Downstream/1608470;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/41399, chr2-CpG: 49/Downstream/13838

Upstream sequence

ggaatggggttgtgacagggtattcacatttttatgactcttaaaacaCTTCTATTTGGTATGCTTGTTTGAAAGGAACCCTGCTGTTAATCCGTTTGAG

Downstream sequence

AAACAAAATATCTTCTGTATTTTCACACACAGTTTTTAAGTGGGAGAGGCAGCTATCATGCTTGATAACAACTTTATACCTTGCATATGTTGCTAAACTT