Basic Information
VIS ID
TVIS30007617
Fusion event
HIV-MAPRE3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
27237527/27014659 (Hg38)
End
27237527/27014659 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAPRE3
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-19b-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-130a-3p ; hsa-mir-106b-5p ; hsa-mir-301a-3p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-3133 ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4428 ; hsa-mir-4773 ; hsa-mir-4708-3p ; hsa-mir-4712-5p ; hsa-mir-770-5p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548c-3p
Nearest miRNA
hsa-mir-1301/Upstream/1685938; hsa-mir-10b/Downstream/981708;
Nearest TSS
ENST00000437798/Upstream/4852; ENST00000474367/Downstream/106;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/43663, chr2-CpG: 46/Downstream/18073
Upstream sequence
CTCCAGGCCAACCCTGCAAATACTCCACTTGCCCCGTCTCTGCATTGATTAATCCAGCTTTGAGAGGCTGAGCCTCTCAATGAATCAGGTCCTTGCTCAG
Downstream sequence
CCATAAGAAGAAGGTGATTGGCCAGGTCTGCCAGGGCTTTGTGACCCGCTGGCTTGCTCCCCAGCCCCTCAGAACCCCTCAGCCCCACCTGCACATACTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate