Basic Information
VIS ID
TVIS30007618
Fusion event
HIV-GTF3C2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
27566284/27343417 (Hg38)
End
27566284/27343417 (Hg38)
Orient
-
Location type
Exonic
Target gene
GTF3C2
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-16-5p ; hsa-mir-10a-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1301/Upstream/2014696; hsa-mir-10b/Downstream/652950;
Nearest TSS
ENST00000437798/Upstream/5158; ENST00000453289/Downstream/215;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/34820, chr2-CpG: 74/Downstream/13012
Upstream sequence
CAGTCTGGAGAGGCTTTCCTGCTCTGGAGGGAGCCTCCTCTGATCAGGAGAATCCTCAAATCCAGGCAAAGGGGTAGGTAATGACATCTCTACGGAAGCC
Downstream sequence
TCTGCACTGGTCATTTCTGAAGAGGTCTTGACATCAAGCTGATTTAGCACCTCTTGTCCAGGAGAGTCTACCACAGTCATGTTCCCCACGGGGCCGGCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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