Basic Information
VIS ID
TVIS30007625
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
28704977/28482110 (Hg38)
End
28704977/28482110 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1301/Upstream/485661; hsa-mir-10b/Downstream/4050043;
Nearest TSS
ENST00000437798/Upstream/24965; ENST00000485642/Downstream/13961;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/88229, chr2-CpG: 36/Downstream/84582
Nearby gene
PLB1(No orient, 13961)
Upstream sequence
ttcaattgcatgtctataccacattttgcttatctagtcatcagtcagtggacacttgggttgcttccgtgttttagtcgttgtgaataatgccgctatg
Downstream sequence
aatgtaggagtgcacatatctcttcaacaccgtgctttcaattcctttggataaatacacagagctagaattgctggttgacatgatcattctattttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate