VISDB Viral Integration Site DataBase

VIS ID

TVIS30007627

Fusion event

HIV-PPP1CB integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.2

Reference genome

Start

End

28994294/28771428 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-18a-5p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-505-3p ; hsa-mir-23b-3p ; hsa-mir-15b-5p ; hsa-mir-548c-3p ; hsa-mir-3148 ; hsa-mir-4668-5p ; hsa-mir-5584-5p ; hsa-mir-4503 ; hsa-mir-7856-5p ; hsa-mir-548t-3p ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-548as-3p ; hsa-mir-548at-3p ; hsa-mir-548ay-3p ; hsa-mir-33a-3p ; hsa-mir-99a-5p ; hsa-mir-99b-5p ; hsa-mir-100-5p ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-100-3p ; hsa-mir-203a-3p ; hsa-mir-4776-3p ; hsa-mir-2909 ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-3162-5p ; hsa-mir-9500 ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-542-5p ; hsa-mir-452-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-3160-5p ; hsa-mir-3134 ; hsa-mir-5683 ; hsa-mir-6768-5p ; hsa-mir-497-3p ; hsa-mir-323a-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-4799-5p ; hsa-mir-6868-3p ; hsa-mir-2117 ; hsa-mir-6845-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-148a-5p ; hsa-mir-4668-3p

Nearest miRNA

hsa-mir-1301/Upstream/774979; hsa-mir-10b/Downstream/3760725;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/18906, chr2-CpG: 57/Downstream/39294

Upstream sequence

gcatgagccactgtactcggccttattcccaatttaacacctcacaagtttgggggtggaggggctagacacaagccaattttaaaacatttgaaagttc

Downstream sequence

aaaaggaaaatctaaagaacaaaattgggatgtttatattactagataccgagactttataaaaagccatagtaattaagacattgtggtattgatgcaa