Basic Information
VIS ID
TVIS30007629
Fusion event
HIV-MEMO1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
32161117/31936048 (Hg38)
End
32161117/31936048 (Hg38)
Orient
+
Location type
Intronic
Target gene
MEMO1
miRNAs that regulate target gene
hsa-mir-4642 ; hsa-mir-580-3p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-3649 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-645 ; hsa-mir-4442 ; hsa-mir-3687 ; hsa-mir-4712-3p ; hsa-mir-6865-5p ; hsa-mir-6815-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-4797-5p ; hsa-mir-3929 ; hsa-mir-324-5p ; hsa-mir-129-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-4477a ; hsa-mir-2115-5p
Nearest miRNA
hsa-mir-1301/Upstream/3939599; hsa-mir-10b/Downstream/596105;
Nearest TSS
ENST00000437798/Upstream/82625; ENST00000605811/Downstream/7335;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/354335, chr2-CpG: 174/Downstream/73536
Upstream sequence
ttattttttatttttatttatttatttatttttgagacagagtctcactctgtcacccaggctggagtgcagtggccacatctcggctcactgcaacctc
Downstream sequence
cacctagcaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcatccgtcaccacacctggctaatttttctatttttagtag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate