Basic Information
VIS ID
TVIS30007632
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
36073420/35848354 (Hg38)
End
36073420/35848354 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1301/Upstream/376868; hsa-mir-10b/Downstream/11529321;
Nearest TSS
ENST00000437798/Upstream/685551; ENST00000428774/Downstream/506760;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2120737, chr2-CpG: 191/Downstream/506900
Nearby gene
CRIM1-DT(No orient, 508472)
Upstream sequence
agacacaatctccctctgttgcccagactgaagtgtagtggcatgatcttggctcattgcaacctctgcctccagggttcaagccattctcatgcctcag
Downstream sequence
cctcccaacgtagctgggattaaaggcatgtgtccaattctataaagaaagtcattggtagcttgaaggggatggcattgaatctataaattaccttggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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