Basic Information
VIS ID
TVIS30007635
Fusion event
HIV-LOC102723739 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
38466442/38239300 (Hg38)
End
38466442/38239300 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102723739
Nearest miRNA
hsa-mir-1301/Upstream/2767814; hsa-mir-10b/Downstream/9138375;
Nearest TSS
ENST00000437798/Upstream/45952; ENST00000457385/Downstream/290;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/161924, chr2-CpG: 118/Downstream/137127
Nearby gene
ATL2(No orient, 54657)
Upstream sequence
gaTATTTCTTCTCTTAGATCAAGTCCCCAGGCAGTGGCCTTCAGTCTGGTAGATAATAAAAAGAAAACTCCAgtcttctttatctttgtatctctaagac
Downstream sequence
ctagcaaagggcttaataatttgttgGCCCTCAAAATGTTTTGTTTCTGAATATTATGGAATTCCCATTGGATTCGTCACAAGAAGTCCTCAAAGTGGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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