Basic Information
VIS ID
TVIS30007637
Fusion event
HIV-ATL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
38557589/38330447 (Hg38)
End
38557589/38330447 (Hg38)
Orient
+
Location type
Intronic
Target gene
ATL2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-125a-5p ; hsa-mir-221-3p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-484 ; hsa-mir-218-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-661 ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-1228-5p ; hsa-mir-1908-5p ; hsa-mir-455-3p ; hsa-mir-4719 ; hsa-mir-5186 ; hsa-mir-541-3p ; hsa-mir-577 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-654-5p ; hsa-mir-663a ; hsa-mir-6752-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6787-5p ; hsa-mir-6842-5p ; hsa-mir-7110-5p ; hsa-mir-7158-5p ; hsa-mir-92a-2-5p
Nearest miRNA
hsa-mir-1301/Upstream/2858961; hsa-mir-10b/Downstream/9047228;
Nearest TSS
ENST00000437798/Upstream/11823; ENST00000457385/Downstream/12968;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/253071, chr2-CpG: 118/Downstream/45980
Upstream sequence
agacaaggatattcattatttatcacttgtactcaatactaccagaggttctagctgggaccatcagccaagacacagaaataaaaggttcccaggtaag
Downstream sequence
aaagaaagaagtaaaacaatcatcatttgcagatgacatgatgttgtatatagaaaactcgaaggaatccgctaaaaaaattattggaactaatgaacaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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