Basic Information
VIS ID
TVIS30007643
Fusion event
HIV-LOC105374497 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
41072224/40845084 (Hg38)
End
41072224/40845084 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374497
Nearest miRNA
hsa-mir-1301/Upstream/5373598; hsa-mir-10b/Downstream/6532591;
Nearest TSS
ENST00000437798/Upstream/98597; ENST00000418836/Downstream/1031990;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/392597, chr2-CpG: 36/Downstream/852368
Nearby gene
SLC8A1(No orient, 332649)
Upstream sequence
cacagtttactttctcagccatttttaaatgtaaggttcggtagtgttaagtatatttccattgttgtgaaacagatctccagaactgtttcatcatgca
Downstream sequence
aaactgaaactctatagccattcaacaacaacttccccagtttttccctcttcccagccattggtaaccactgttctactttatgtttctatgaatttga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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