Basic Information
VIS ID
TVIS30007646
Fusion event
HIV-THADA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
43610907/43383768 (Hg38)
End
43610907/43383768 (Hg38)
Orient
+
Location type
Intronic
Target gene
THADA
miRNAs that regulate target gene
hsa-mir-505-3p ; hsa-mir-106b-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-1301/Upstream/7912282; hsa-mir-10b/Downstream/3993907;
Nearest TSS
ENST00000437798/Upstream/11531; ENST00000460356/Downstream/8154;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/155956, chr2-CpG: 42/Downstream/212021
Upstream sequence
ccaagattctgcatttctaaccagttctaagcaatgctgattctgtggtccagaaccacactttgagtgacaaggTTCTCTAAACTGTGCCTGACCTCAG
Downstream sequence
GAAATGAGTGCTTACTAACACTCCACAGCAACCTATTGCATCTGTGAAAGGTCAATCATTAAAAAAAGTGAAAAACGTTGTCAATTCTTAAATTTATACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate