Basic Information
VIS ID
TVIS30007649
Fusion event
HIV-LRPPRC integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
44192443/43965304 (Hg38)
End
44192443/43965304 (Hg38)
Orient
+
Location type
Intronic
Target gene
LRPPRC
miRNAs that regulate target gene
hsa-mir-340-5p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-576-5p ; hsa-mir-620 ; hsa-mir-4531 ; hsa-mir-1270 ; hsa-mir-4633-5p ; hsa-mir-139-3p ; hsa-mir-769-5p ; hsa-mir-432-5p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-532-5p ; hsa-mir-6813-3p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p
Nearest miRNA
hsa-mir-1301/Upstream/8493818; hsa-mir-10b/Downstream/3412371;
Nearest TSS
ENST00000437798/Upstream/1500; ENST00000409486/Downstream/30672;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/133211, chr2-CpG: 80/Downstream/30298
Upstream sequence
ttggtcaggctggtcttggactcctgacctcgtgatcctagagatggggtttcaccatgttggtcaagctggtcttgaacccctgacctcgtgatctgcc
Downstream sequence
cgcctcagcctcccaaagtgttgggattacaggcatgagccaccacgcccagcctggacccttatcttatacaatacacaaaaatcaactcaaaatagat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate