Basic Information
VIS ID
TVIS30007652
Fusion event
HIV-EPCAM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
47608764/47381625 (Hg38)
End
47608764/47381625 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
EPCAM
Nearest miRNA
hsa-mir-1301/Upstream/3855; hsa-mir-10b/Downstream/1677978;
Nearest TSS
ENST00000437798/Upstream/7850; ENST00000454849/Downstream/21344;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/11508, chr2-CpG: 76/Downstream/21303
Nearest cancer related gene
EPCAM(OG, No orient, 0)
Upstream sequence
AATTCCTATTTCACTCCACCAGGCTGGCCATATTGCCCAGCTGTGTGAGGGTGGCATGTCCAGAGCACAGTAGTAGGAAAGGCGTTGGGCAGTGTATCCA
Downstream sequence
TTTtcaaagacatttacatatttaaaaatacaaaaaagtaaactcccaagaaaattaattgagggaatgtttgtacaaccttgtggtaggggaaattatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate