Basic Information
VIS ID
TVIS30007657
Fusion event
HIV-LOC730100 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
52432730/52205592 (Hg38)
End
52432730/52205592 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC730100
Nearest miRNA
hsa-mir-1301/Upstream/1509330; hsa-mir-10b/Downstream/496930;
Nearest TSS
ENST00000437798/Upstream/980017; ENST00000435357/Downstream/167526;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1177232, chr2-CpG: 118/Downstream/365673
Nearby gene
MIR4431(No orient, 496930)
Upstream sequence
TACCAAGACAGAATAAAGGTGTTATCTGTAATTAGATTACATTTTTGCCTTCGTGCATCAAAATGCTTTATAATTTAAATCAAAATTGGCAAGCATTTAA
Downstream sequence
ATATCACGATGAGGTACTCACTTTTTACTTAAATACATAAATTAGCATATGCAACGCAGTTTGCTAGTTTGATTATCAGGCACATATTATGCATTATAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate