Basic Information
VIS ID
TVIS30007658
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.2
Reference genome
GRCh37/hg19
Start
53750487/53523349 (Hg38)
End
53750487/53523349 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2D ; FRA2H
Nearest miRNA
hsa-mir-1301/Upstream/820734; hsa-mir-10b/Downstream/325773;
Nearest TSS
ENST00000437798/Upstream/613329; ENST00000295304/Downstream/82729;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/893363, chr2-CpG: 28/Downstream/244405
Nearby gene
ASB3(No orient, 146630)
Upstream sequence
CTTCGGGGACTATTTCTTTTGTTATACTCTGTCTGGGTACTCAGGATCACCCTAAAATCAATAGTTACATACATTCCATCTAAGGAATAGATGGCCCAAA
Downstream sequence
GGGGCTATTCTGCCATATTAACGTATCAGATGAGGCCTCCATGTCTACTTATGCTCACAGGCCATAGCCACACAATTCTGGGGCATTCTTCATGGCTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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