Fusion event
HIV-SPTBN1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
54841410/54614273 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1301/Upstream/765068; hsa-mir-10b/Downstream/1368694;
Nearest cancer related gene
Upstream sequence
TTTCTCCAGCAGCTTTATTAAAACATTACCTATTCTACAAAAATAATATGATTATGAATCAGCCAAGGCCCAGCTGTAGATATCCAGCATATCTATAAGG
Downstream sequence
ATACTCCACATATCCTTGTAGATACATAGGGTCAAGCTTCCCTGTGTACCTACAACGGTCTCTCCTTCCACCAGCTCCTGAATATACGGTTTTACAAGTT
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.