Basic Information
VIS ID
TVIS30007672
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
55961979/55734844 (Hg38)
End
55961979/55734844 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/1885639; hsa-mir-10b/Downstream/248123;
Nearest TSS
ENST00000437798/Upstream/40934; ENST00000606639/Downstream/182936;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/40836, chr2-CpG: 50/Downstream/188361
Nearby gene
PNPT1(No orient, 40934)
Upstream sequence
GGTTTCTAATGAAAGAAGGGTGGGTCCTTATTAGAAAGATGTTTTAACCAAAAAATACAAAATGTTTAAATGGTGTTCCAAATACTTCATAGCAGTCTAG
Downstream sequence
ATAAGAAAAACCCAGATTCCTGTATTGTTTCTGCAGTATTACGCTAGCTCTTTTATATGATTGACAGCTAATTCTCTTGTTTATGTTTCCCTTCTTTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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